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List of Publications

Publications

  1. JC Rozum, R Albert
    Leveraging network structure in nonlinear control
    npj Systems Biology and Applications, 2022
  2. C Campbell, L Russo, R Albert, A Buckling, K Shea
    PLOS Computational Biology, 2022
  3. P Maheshwari, SM Assmann, R Albert
    Frontiers in Genetics, 2022
  4. JC Rozum, D Deritei, KH Park, J Gomez Tejeda Zanudo, R Albert
    Bioinformatics, 2022
  5. E Newby, J Gomez Tejeda Zañudo, R Albert
    Chaos: An Interdisciplinary Journal of Nonlinear Science, 2022
  6. F Sadat Fatemi Nasrollahi, J Gomez Tejeda Zanudo, C Campbell, R Albert
    Physical Review E, 2021
  7. VK Mony, A Drangowska-Way, R Albert, E Harrison, A Ghaddar, MK Horak, W Ke, EJ O’Rourke
    Proceedings of the National Academy of Sciences, 2021
  8. DJ Wooten, M Gebru, HG Wang, R Albert
    Journal of Personalized Medicine, 2021
  9. J Gomez Tejeda Zanudo, P Mao, C Alcon, K Kowalski, GN Johnson, G Xu, J Baselga, M Scaltriti, A Letai, J Montero, R Albert, N Wagle
    Cancer research, 2021
  10. JC Rozum, JGT Zanudo, X Gan, D Deritei, R Albert
    Science Advances, 2021
  11. DJ Wooten, JGT Zanudo, D Murrugarra, AM Perry, A Dongari-Bagtzoglou, R Laubenbacher, CJ Nobile, R Albert
    PLoS Computational Biology, 2021
  12. P Maheshwari, SM Assmann, R Albert
    Frontiers in Physiology, 2020
  13. D Deritei, J Rozum, E Ravasz Regan, R Albert
    Scientific Reports, 2019
  14. P Maheshwari, H Du, J Sheen, SM Assmann, R Albert
    PLoS Comp. Biology, 2019
  15. Jorge GT Zanudo, MT Guinn, K Farquhar, M Szenk, SN Steinway, G Balazsi, R Albert
    Physical Biology, 2019
  16. C Campbell, R Albert
    Chaos, 2019
  17. JC Rozum, R. Albert
    J. Theor. Biol, 2018
  18. JC Rozum, R. Albert
    PLoS Comput Biol, 2018
  19. X Gan, R Albert
    Phys Rev E, 2018
  20. JGT Zanudo, SN Steinway, R Albert
    Current opinion in Systems Biology, 2018
  21. G Yang, JGT Zanudo, R Albert
    Frontiers in Physiology, 2018
  22. P Maheshwari, R. Albert
    BMC Systems Biology, 2017
  23. R Albert, BR Acharya, BW Jeon, JGT Zanudo, M Zhu, K Osman, S. Assmann
    PLoS Biology, 2017
  24. J Gomez Tejeda Zanudo, R Albert
    bioRxiv, 2017
  25. C Campbell, S Aucott, J Ruths, D Ruths, K Shea, R Albert
    Scientific Reports, 2017
  26. G Yang, C Campbell, R Albert
    Physical Review E, 2017
  27. Z Sun, R Albert
    Network Science, 2017
  28. X Gan, R Albert
    BMC Systems Biology, 2017
  29. Zanudo, Jorge GT; Yang, Gang; Albert, Reka;
    Proceedings of the National Academy of Sciences , 2017
  30. Campbell, Colin; Shea, Katriona; Yang, Suann; Albert, Reka;
    Journal of Complex Networks, 2016
  31. Saadatpour, Assieh; Albert, Reka;
    EPJ Nonlinear Biomedical Physics, 2016
  32. Zanudo, Jorge GT; Albert, Reka;
    PLoS Comput Biol, 2015
  33. Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Oikos, 2015
  34. Albert, Reka; Robeva, Raina;
    Algebraic and discrete mathematical methods for modern biology, 2015
  35. Rajtmajer, Sarah M; Roy, Arnab; Albert, Reka; Molenaar, Peter CM; Hillary, Frank G;
    Frontiers in neuroanatomy, 2015
  36. Campbell, Colin; Ruths, Justin; Ruths, Derek; Shea, Katriona; Albert, Reka;
    Scientific reports, 2015
  37. Steinway, Steven Nathaniel; Zanudo, Jorge Gomez Tejeda; Michel, Paul J; Feith, David J; Loughran, Thomas P; Albert, Reka;
    NPJ Systems Biology and Applications, 2015
  38. LaBar, Thomas; Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Theoretical ecology, 2014
  39. Albert, Reka; DasGupta, Bhaskar; Mobasheri, Nasim;
    Physical Review E, 2014
  40. Campbell, Colin; Albert, Reka;
    BMC systems biology, 2014
  41. Jones, Alexander M; Xuan, Yuanhu; Xu, Meng; Wang, Rui-Sheng; Ho, Cheng-Hsun; Lalonde, Sylvie; You, Chang Hun; Sardi, Maria I; Parsa, Saman A; Smith-Valle, Erika;
    Science, 2014
  42. Albert, Reka; Thakar, Juilee;
    Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2014
  43. Steinway, Steven Nathaniel; Zanudo, Jorge GT; Ding, Wei; Rountree, Carl Bart; Feith, David J; Loughran, Thomas P; Albert, Reka;
    Cancer research, 2014
  44. Campbell, Colin; Shea, Katriona; Albert, Reka;
    Science, 2014
  45. Sun, Zhongyao; Jin, Xiaofen; Albert, Reka; Assmann, Sarah M;
    PLoS Comput Biol, 2014
  46. Saadatpour, Assieh; Albert, Reka;
    Methods, 2013
  47. Lass, Sandra; Hudson, Peter J; Thakar, Juilee; Saric, Jasmina; Harvill, Eric; Albert, Reka; Perkins, Sarah E;
    Journal of The Royal Society Interface, 2013
  48. Saadatpour, Assieh; Albert, Reka; Reluga, Timothy C;
    SIAM Journal on Applied Dynamical Systems, 2013
  49. Wang, Rui-Sheng; Albert, Reka;
    Physical Review E, 2013
  50. Wang, Rui-Sheng; Sun, Zhongyao; Albert, Reka;
    International Transactions in Operational Research, 2013
  51. LaBar, Thomas; Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Theoretical ecology, 2013
  52. Zanudo, Jorge GT; Albert, Reka;
    Chaos: An Interdisciplinary Journal of Nonlinear Science, 2013
  53. Albert, Reka; Collins, James J; Glass, Leon;
    Chaos: An Interdisciplinary Journal of Nonlinear Science, 2013
  54. Yang, Suann; Albert, Reka; Carlo, Tomas A;
    Ecosphere, 2013
  55. Jin, Xiaofen; Wang, Rui-Sheng; Zhu, Mengmeng; Jeon, Byeong Wook; Albert, Reka; Chen, Sixue; Assmann, Sarah M;
    The Plant Cell, 2013
  56. Cui, LiYing; Kumara, Soundar; Albert, Reka;
    Handbook of Optimization in Complex Networks, 2012
  57. Thakar, Juilee; Pathak, Ashutosh K; Murphy, Lisa; Albert, Reka; Cattadori, Isabella M;
    Plos Comput biol, 2012
  58. Motter, Adilson E; Albert, Reka;
    Phys. Today, 2012
  59. Campbell, Colin; Yang, Suann; Shea, Katriona; Albert, Reka;
    Physical Review E, 2012
  60. Wang, Rui-Sheng; Saadatpour, Assieh; Albert, Reka;
    Physical biology, 2012
  61. Saadatpour, Assieh; Albert, Reka;
    Computational Modeling of Signaling Networks, 2012
  62. Wang, Rui-Sheng; Albert, Reka;
    BMC Systems biology, 2011
  63. Campbell, Colin; Yang, Suann; Albert, Reka; Shea, Katriona;
    Proceedings of the National Academy of Sciences, 2011
  64. Walsh, Elizabeth R; Thakar, Juilee; Stokes, Kindra; Huang, Fei; Albert, Reka; August, Avery;
    The Journal of Immunology, 2011
  65. Wang, Rui-Sheng; Pandey, Sona; Li, Song; Gookin, Timothy E; Zhao, Zhixin; Albert, Reka; Assmann, Sarah M;
    BMC genomics, 2011
  66. Albert, Reka; DasGupta, Bhaskar; Hegde, Rashmi; Sivanathan, Gowri Sangeetha; Gitter, Anthony; Gursoy, Gamze; Paul, Pradyut; Sontag, Eduardo;
    Physical Review E, 2011
  67. Campbell, Colin; Thakar, Juilee; Albert, Reka;
    Physical Review E, 2011
  68. Saadatpour, Assieh; Wang, Rui-Sheng; Liao, Aijun; Liu, Xin; Loughran, Thomas P; Albert, Istvan; Albert, Reka;
    PLoS Comput Biol, 2011
  69. Campbell, Colin; Zhang, Ranran; Haley, Jeremy Scott; Liu, Xin; Loughran, Thomas; Schell, Todd; Albert, Reka; Thakar, Juilee;
    Frontiers in Systems Physiology, 2011
  70. Pandey, Sona; Wang, Ruishengg; Wilson, Liza; Li, Song; Zhao, Zhixin; Gookin, Timothy E; Assmann, Sarah M; Albert, Reka;
    Molecular systems biology, 2010
  71. Cui, LiYing; Kumara, Soundar; Albert, Reka;
    Complex networks: An engineering view
    IEEE Circuits and Systems Magazine, 2010
  72. Christensen, Claire; Albert, Istvan; Grenfell, Bryan; Albert, Reka;
    Disease dynamics in a dynamic social network
    Physica A: Statistical Mechanics and its Applications, 2010
  73. Thakar, Juilee; Albert, Reka;
    Boolean models of within-host immune interactions
    Current opinion in microbiology, 2010
  74. Saadatpour, Assieh; Albert, Istvan; Albert, Reka;
    Attractor analysis of asynchronous Boolean models of signal transduction networks
    Journal of theoretical biology, 2010
  75. Albert, Reka; DasGupta, Bhaskar; Sontag, Eduardo;
    Inference of signal transduction networks from double causal evidence
    Computational Biology, 2010
  76. Thakar, Juilee; Albert, Reka;
    Boolean Networks in Inference and Dynamic Modeling of Biological Systems at the Molecular and Physiological Level
    Handbook On Biological Networks, 2010
  77. Albert, Reka; Wang, Rui-Sheng;
    Discrete dynamic modeling of cellular signaling networks
    Methods in enzymology, 2009
  78. Thakar, Juilee; Saadatpour-Moghaddam, Assieh; Harvill, Eric T; Albert, Reka;
    Constraint-based network model of pathogen immune system interactions
    Journal of the Royal Society Interface, 2009
  79. Albert, Reka; Assmann, Sarah M;
    An Overview of Systems Biology
    Annual Plant Reviews, Plant Systems Biology, 2009
  80. Thakar, Juilee; Albert, Reka;
    Boolean Networks in Inference and Dynamic Modeling of Biological Systems at the Molecular and Physiological Level
    Handbook on Biological Networks, World Scientific, Singapore, 2009
  81. Zhang, Ranran; Shah, Mithun Vinod; Yang, Jun; Nyland, Susan B; Liu, Xin; Yun, Jong K; Albert, Reka; Loughran, Thomas P;
    Network model of survival signaling in large granular lymphocyte leukemia
    Proceedings of the National Academy of Sciences, 2008
  82. Albert, Reka; DasGupta, Bhaskar; Dondi, Riccardo; Sontag, Eduardo;
    Inferring (biological) signal transduction networks via transitive reductions of directed graphs
    Algorithmica, 2008
  83. Kachalo, Sema; Zhang, Ranran; Sontag, Eduardo; Albert, Reka; DasGupta, Bhaskar;
    NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks
    Bioinformatics, 2008
  84. Tyson, John J; Albert, Reka; Goldbeter, Albert; Ruoff, Peter; Sible, Jill;
    Biological switches and clocks
    Journal of The Royal Society Interface, 2008
  85. Chaves, Madalena; Albert, Reka;
    Studying the effect of cell division on expression patterns of the segment polarity genes
    Journal of The Royal Society Interface, 2008
  86. Thakar, Juilee; Christensen, Claire; Albert, Reka;
    Toward understanding the structure and function of cellular interaction networks
    Handbook of Large-Scale Random Networks, 2008
  87. Albert, Istvan; Thakar, Juilee; Li, Song; Zhang, Ranran; Albert, Reka;
    Boolean network simulations for life scientists
    Source Code for Biology and Medicine, 2008
  88. Wijeratne, Asela J; Zhang, Wei; Sun, Yujin; Liu, Wenlei; Albert, Reka; Zheng, Zhengui; Oppenheimer, David G; Zhao, Dazhong; Ma, Hong;
    Differential gene expression in Arabidopsis wild_��type and mutant anthers: insights into anther cell differentiation and regulatory networks
    The Plant Journal, 2007
  89. Albert, Reka;
    Network inference, analysis, and modeling in systems biology
    The Plant Cell, 2007
  90. Thakar, Juilee; Pilione, Mylisa; Kirimanjeswara, Girish; Harvill, Eric T; Albert, Reka;
    Modeling systems-level regulation of host immune responses
    PLoS Comput Biol, 2007
  91. Albert, Reka; DasGupta, Bhaskar; Dondi, Riccardo; Kachalo, Sema; Sontag, Eduardo; Zelikovsky, Alexander; Westbrooks, Kelly;
    A novel method for signal transduction network inference from indirect experimental evidence
    Journal of Computational Biology, 2007
  92. Christensen, C; Thakar, J; Albert, R;
    Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks
    IET systems biology, 2007
  93. Christensen, Claire; Albert, Reka;
    Using graph concepts to understand the organization of complex systems
    International Journal of Bifurcation and Chaos, 2007
  94. Cattadori, Isabella M; Albert, Reka; Boag, Brian;
    Variation in host susceptibility and infectiousness generated by co-infection: the myxoma Trichostrongylus retortaeformis case in wild rabbits
    Journal of the Royal Society Interface, 2007
  95. Thadakamalla, HP; Albert, Reka; Kumara, SRT;
    Search in spatial scale-free networks
    New Journal of Physics, 2007
  96. Albert, Reka; Oltvai, Zoltan N;
    Shaping specificity in signaling networks
    Nature genetics, 2007
  97. Christensen, Claire; Gupta, Anshuman; Maranas, Costas D; Albert, Reka;
    Large-scale inference and graph-theoretical analysis of gene-regulatory networks in B. Subtilis
    Physica A: Statistical Mechanics and its Applications, 2007
  98. Joo, Jaewook; Harvill, Eric; Albert, Reka;
    Effects of Noise on Ecological Invasion Processes: Bacteriophage-Mediated Competition in Bacteria
    Journal of Statistical Physics, 2007
  99. Raghavan, Usha Nandini; Albert, Reka; Kumara, Soundar;
    Near linear time algorithm to detect community structures in large-scale networks
    Physical review. E, Statistical, nonlinear, and soft matter physics, 2007
  100. Li, Song; Assmann, Sarah M; Albert, Reka;
    Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling
    PLoS Biol, 2006
  101. Chaves, Madalena; Sontag, Eduardo D; Albert, Reka;
    Methods of robustness analysis for Boolean models of gene control networks
    IEE Proc. Syst. Biol, 2006
  102. Gupta, Anshuman; Maranas, Costas D; Albert, Reka;
    Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites
    Bioinformatics, 2006
  103. Joo, Jaewook; Gunny, Michelle; Cases, Marisa; Hudson, Peter; Albert, Reka; Harvill, Eric;
    Bacteriophage-mediated competition in Bordetella bacteria
    Proceedings of the Royal Society of London B: Biological Sciences, 2006
  104. Chaves, Madalena; Sontag, Eduardo D; Albert, Reka;
    Structure and timescale analysis in genetic regulatory networks
    Proceedings of the 45th IEEE Conference on Decision and Control, 2006
  105. Albert, Reka;
    Scale-free networks in cell biology
    Journal of cell science, 2005
  106. Chaves, Madalena; Albert, Reka; Sontag, Eduardo D;
    Robustness and fragility of Boolean models for genetic regulatory networks
    Journal of theoretical biology, 2005
  107. Kinney, Ryan; Crucitti, Paolo; Albert, Reka; Latora, Vito;
    Modeling cascading failures in the North American power grid
    The European Physical Journal B-Condensed Matter and Complex Systems, 2005
  108. Thadakamalla, Hari P; Albert, Reka; Kumara, Soundar RT;
    Search in weighted complex networks
    Physical Review E, 2005
  109. Albert, Reka; Albert, Istvan; Nakarado, Gary L;
    Structural vulnerability of the North American power grid
    Physical review E, 2004
  110. Albert, Istvan; Albert, Reka;
    Conserved network motifs allow protein protein interaction prediction
    Bioinformatics, 2004
  111. Albert, Reka; Chiu, Yu-wen; Othmer, Hans G;
    Dynamic Receptor Team Formation Can Explain the High Signal Transduction Gain in Escherichia coli
    Biophysical journal, 2004
  112. Albert, Reka; Othmer, Hans G;
    The topology and signature of the regulatory interactions predict the expression pattern of the segment polarity genes in Drosophila melanogaster
    Journal of Theoretical Biology, 2003
  113. Albert, R; Barabasi, AL;
    Statistical mechanics of complex networks
    Rev. Mod. Phys., 2002
  114. Albert, I; Tegzes, P; Albert, R; Sample, JG; Barabasi, A-L; Vicsek, T; Kahng, B; Schiffer, P;
    Stick-slip fluctuations in granular drag
    Physical Review E, 2001
  115. Albert, Reka; Jeong, Hawoong; Barabasi, Albert-Laszlo;
    correction: Error and attack tolerance of complex networks
    Nature, 2001
  116. Albert, Reka; Jeong, Hawoong; Barabasi, Albert-Laszlo;
    Error and attack tolerance of complex networks
    Nature, 2000
  117. Albert, I; Tegzes, P; Kahng, B; Albert, R; Sample, JG; Pfeifer, M; Barabasi, A-L; Vicsek, T; Schiffer, P;
    Jamming and fluctuations in granular drag
    Physical review letters, 2000
  118. Albert, Reka; Barabasi, Albert-Laszlo;
    Topology of Evolving Networks: Local Events and Universality
    Physical Review Letters, 2000
  119. Albert, Reka; Barabasi, Albert-Laszlo;
    Scaling Laws for the Period of Boolean Networks
    Physical Review Letters, 2000
  120. Jeong, H; Tombor, B; Albert, R; Oltvai, ZN; Barabasi, AL;
    The large-scale organization of metabolic networks
    Nature, 2000
  121. Albert, R; Jeong, H; Barabasi, AL;
    Diameter of the world-wide web
    Nature, 1999
  122. Barabasi, Albert-Laszlo; Albert, Reka; Jeong, Hawoong;
    Mean-field theory for scale-free random networks
    Physica A: Statistical Mechanics and its Applications, 1999
  123. Barabasi, Albert-Laszlo; Albert, Reka;
    Emergence of scaling in random networks
    Science, 1999
  124. Albert, R; Pfeifer, MA; Barabasi, A-L; Schiffer, P;
    Slow drag in a granular medium
    Physical review letters, 1999
  125. Barabasi, Albert-Laszlo; Albert, Reka; Schiffer, Peter;
    The physics of sand castles: maximum angle of stability in wet and dry granular media
    Physica A: Statistical Mechanics and its Applications, 1999
  126. Tegzes, P; Albert, R; Paskvan, M; Barabasi, AL; Vicsek, T; Schiffer, P;
    Liquid-induced transitions in granular media
    Physical Review E, 1999
  127. Albert, Reka; Barabasi, Albert-Laszlo; Carle, Nathan; Dougherty, Andrew;
    Driven interfaces in disordered media: determination of universality classes from experimental data
    Physical review letters, 1998
  128. Hornbaker, DJ; Albert, Reka; Albert, Istvan; Barabasi, Albert-Laszlo; Schiffer, Peter;
    What keeps sandcastles standing?
    Nature, 1997
  129. Albert, Reka; Albert, Istvan; Hornbaker, Daniel; Schiffer, Peter; Barabasi, Albert-Laszlo;
    Maximum angle of stability in wet and dry spherical granular media
    Physical Review E, 1997